Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A, 2014. "Integrating influenza antigenic dynamics with molecular evolution". eLife 3: e01914.
Obbard DJ, Dudas G, 2014. "The genetics of host–virus coevolution in invertebrates". Current Opinion in Virology 8: 73–78.
Dudas G, Obbard DJ, 2014. "Phylogeny: Are arthropods at the heart of virus evolution?". eLife 4: e06837.
Carroll MW, Matthews DA, Hiscox JA, Elmore MJ, Pollakis G, Rambaut A, Hewson R, García-Dorival I, Bore JA, Koundouno R, Abdellati S, Afrough B, Aiyepada J, Akhilomen P, Asogun D, Atkinson B, Badusche M, Bah A, Bate S, Baumann J, Becker D, Becker-Ziaja B, Bocquin A, Borremans B, Bosworth A, Boettcher JP, Cannas A, Carletti F, Castilletti C, Clark S, Colavita F, Diederich S, Donatus A, Duraffour S, Ehichioya D, Ellerbrok H, Fernandez-Garcia MD, Fizet A, Fleischmann E, Gryseels S, Hermelink A, Hinzmann J, Hopf-Guevara U, Ighodalo Y, Jameson L, Kelterbaum A, Kis Z, Kloth S, Kohl C, Korva M, Kraus A, Kuisma E, Kurth A, Liedigk B, Logue CH, Lüdtke A, Maes P, McCowen J, Mély S, Mertens M, Meschi S, Meyer B, Michel J, Molkenthin P, Muñoz-Fontela C, Muth D, Newman ENC, Ngabo D, Oestereich L, Okosun J, Olokor T, Omiunu R, Omomoh E, Pallasch E, Pályi B, Portmann J, Pottage T, Pratt C, Priesnitz S, Quartu S, Rappe J, Repits J, Richter M, Rudolf M, Sachse A, Schmidt KM, Schudt G, Strecker T, Thom R, Thomas S, Tobin E, Tolley H, Trautner J, Vermoesen T, Vitoriano I, Wagner M, Wolff S, Yue C, Rosaria Capobianchi M, Kretschmer B, Hall Y, Kenny JG, Rickett NY, Dudas G, Coltart CEM, Kerber R, Steer D, Wright C, Senyah F, Keita S, Drury P, Diallo B, de Clerck H, Herp MV, Sprecher A, Traore A, Diakite M, Konde MK, Koivogui L, Magassouba N, Avšič-Županc T, Nitsche A, Strasser M, Ippolito G, Becker S, Stoecker K, Gabriel M, Raoul H, Di Caro A, Wölfel R, Formenty P, Günther S, 2015. "Temporal and spatial analysis of the 2014–2015 Ebola virus outbreak in West Africa". Nature 524(7563), 97–101.
Ladner JT, Wiley MR, Mate S, Dudas G, Prieto K, Lovett S, Nagle ER, Beitzel B, Gilbert ML, Fakoli L, Diclaro JW, Schoepp RJ, Fair J, Kuhn JH, Hensley LE, Park DJ, Sabeti PC, Rambaut A, Sanchez-Lockhart M, Bolay FK, Kugelman JR, Palacios G, 2015. "Evolution and Spread of Ebola Virus in Liberia, 2014–2015". Cell 18(6), 659-669.
Arias A, Watson SJ, Asogun D, Tobin EA, Lu J, Phan MVT, Jah U, Wadoum REG, Meredith L, Caddy LTS, Tarawalie A, Langat P, Dudas G, Faria NR, Dellicour S, Kamara A, Kargbo B, Kamara BO, Gevao S, Cooper D, Newport M, Horby P, Dunning J, Sahr F, Brooks T, Simpson AJH, Groppelli E, Liu G, Mulakken N, Rhodes K, Akpablie J, Yoti Z, Lamunu M, Vitto E, Otim P, Owilli C, Boateng I, Okoror L, Omomoh E, Oyakhilome J, Omiunu R, Yemisis I, Adomeh D, Ehikhiametalor S, Akhilomen P, Aire C, Kurth A, Cook N, Baumann J, Gabriel M, Wölfel R, Di Caro A, Carroll MW, Günther S, Redd J, Naidoo D, Pybus OG, Rambaut A, Kellam P, Goodfellow I, Cotten M, 2016. "Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases". Virus Evolution 2(1): vew016.
Quick J, Loman NJ, Duraffour S, Simpson JT, Severi E, Cowley L, Bore JA, Koundouno R, Dudas G, Mikhail A, Ouédraogo N, Afrough B, Bah A, Baum JHJ, Becker-Ziaja B, Boettcher JP, Cabeza-Cabrerizo M, Camino-Sánchez A, Carter LL, Doerrbecker J, Enkirch T, García-Dorival I, Hetzelt N, Hinzmann J, Holm T, Kafetzopoulou LE, Koropogui M, Kosgey A, Kuisma E, Logue CH, Mazzarelli A, Meisel S, Mertens M, Michel J, Ngabo D, Nitzsche K, Pallasch E, Patrono LV, Portmann J, Repits JG, Rickett NY, Sachse A, Singethan K, Vitoriano I, Yemanaberhan RL, Zekeng EG, Racine T, Bello A, Faye O, Faye O, Magassouba N, Williams CV, Amburgey V, Winona L, Davis E, Gerlach J, Washington F, Monteil V, Jourdain M, Bererd M, Camara A, Somlare H, Camara A, Gerard M, Bado G, Baillet B, Delaune D, Yacouba Nebie KY, Diarra A, Savane Y, Pallawo RB, Gutierrez GJ, Milhano N, Roger I, Williams CJ, Yattara F, Lewandowski K, Taylor J, Rachwal P, Turner DJ, Pollakis G, Hiscox JA, Matthews DA, O’Shea MK, Johnston AMcD, Wilson D, Hutley E, Smit E, Di Caro A, Wölfel R, Stoecker K, Fleischmann E, Gabriel M, Weller SA, Koivogui L, Diallo B, Keïta S, Rambaut A, Formenty P, Günther S, Carroll MW, 2016. "Real-time, portable genome sequencing for Ebola surveillance". Nature 530(7589), 228-232.
Lewis NS, Russell CA, Langat P, Anderson TK, Berger K, Bielejec F, Burke DF, Dudas G, Fonville JM, Fouchier RAM, Kellam P, Koel BF, Lemey P, Nguyen T, Nuansrichy B, Peiris MJS, Saito T, Simon G, Skepner E, Takemae N, Webby RJ, Van Reeth K, Brookes SM, Larsen L, Watson SJ, Brown IH, Vincent AL, 2016. "The global antigenic diversity of swine influenza A viruses". eLife 5: e12217.
Whitmer SLM, Albariño C, Shepard SS, Dudas G, Sheth M, Brown SC, Cannon D, Erickson BR, Gibbons A, Schuh A, Sealy T, Ervin E, Frace M, Uyeki TM, Nichol ST, Ströher U, 2016. "Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences". Journal of Infectious Diseases: jiw177.
Holmes EC, Dudas G, Rambaut A, Andersen KG, 2016. "The evolution of Ebola virus: Insights from the 2013–2016 epidemic". Nature 538(7624): 193:200.
Black A, Potter B, Dudas G, Feldstein L, Grubaugh ND, Andersen KG, Ellis BR, Ellis EM, Bedford T, 2017. "Genetic characterization of the Zika virus epidemic in the US Virgin Islands". bioRxiv: 113100.
Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels R, Russell C, Pybus OG, McCauley J, Kellam P, Watson SJ, 2017. "Genome-wide evolutionary dynamics of influenza B viruses on a global scale". PLoS Pathogens 13(12): e1006749.
Whitmer SLM, Ladner JT, Wiley MR, Patel K, Dudas G, Rambaut A, Sahr F, Prieto K, Shepard SS, Carmody E, Knust B, Naidoo D, Deen G, Formenty P, Nichol ST, Palacios G, Ströher U, 2018. "Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors". Cell Reports 22(5): 1159-1168.
Chu DKW, Hui Kenrie PY, Perera RAPM, Miguel E, Niemeyer D, Zhao J, Channappanavar R, Dudas G, Oladipo JO, Traoré A, Fassi-Fihri O, Ali A, Demissie GF, Muth D, Chan MCW, Nicholls JM, Meyerholz DK, Kuranga SA, Mamo G, Zhou Z, So RTY, Hemida MG, Webby RJ, Roger F, Rambaut A, Poon LLM, Perlman S, Drosten C, Chevalier V, Peiris M, 2018. "MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity". PNAS 115(12): 3144-3149.
Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P, 2018. "Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak". Nature Communications 9: 2222.
Müller NF, Dudas G, Stadler T, 2019. "Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations". Virus Evolution 5(2): vez030.
Müller NF, Stolz U, Dudas G, Stadler T, Vaughan TG, 2019. "Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses". PNAS: 117 (29) 17104-17111.
Karcher MD, Carvalho MC, Suchard MA, Dudas G, Minin VN, 2020. "Estimating effective population size changes from preferentially sampled genetic sequences". PLoS Comput Biol16(10): e1007774.
Pirnay JP, Selhorst P, Hong SL, Cochez C, Potter B, Maes P, Petrillo M, Dudas G, Claes V, Van der Beken Y, Verbeken G, Degueldre J, Dellicour S, Cuypers L, T’Sas F, Van den Eede G, Verhasselt B, Weuts W, Smets C, Mertens J, Geeraerts P, Ariën KK, André E, Neirinckx P, Soentjens P, Baele G, 2021. "Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations". Viruses 13(7): 1359.
Zeller M, Gangavarapu K, Anderson C, Smither AR, Vanchiere JA, Rose R, Snyder DJ, Dudas G, Watts A, Matteson NL, Robles-Sikisaka R, Marshall M, Feehan AK, Sabino-Santos Jr G, Bell-Kareem AR, Hughes LD, Alkuzweny M, Snarski P, Garcia-Diaz J, Scott RS, Melnik LI, Klitting R, McGraw M, Belda-Ferre P, DeHoff P, Sathe S, Marotz C, Grubaugh N, Nolan DJ, Drouin AC, Genemaras KJ, Chao K, Topol S, Spencer E, Nicholson L, Aigner S, Yeo GW, Farnaes L, Hobbs CA, Laurent LC, Knight R, Hodcroft EB, Khan K, Fusco DN, Cooper VS, Lemey P, Gardner L, Lamers SL, Kamil JP, Garry RF, Suchard MA, Andersen KG, 2021. "Emergence of an early SARS-CoV-2 epidemic in the United States". Cell 184, 4939–4952.
Pautienius A, Dudas G, Simkute E, Grigas J, Zakiene I, Paulauskas A, Armonaite A, Zienius D, Slyzius E, Stankevicius A., 2021. "Bulk Milk Tank Samples Are Suitable to Assess Circulation of Tick-Borne Encephalitis Virus in High Endemic Areas". Viruses 13(9): 1772.
Chazot N, Condamine FL, Dudas G, Peña C, Kodandaramaiah U, Matos-Maraví P, Aduse-Poku K, Elias M, Warren A, Lohman DJ, Penz CM, DeVries P, Fric ZF, Nylin S, Müller C, Kawahara AY, Silva-Brandão KL, Lamas G, Kleckova I, Zubek A, Ortiz-Acevedo E, Vila R, Vane-Wright RI, Mullen SP, Jiggins CD, Wheat C, Freitas AVL, Wahlberg N, 2021. "Conserved ancestral tropical niche but different continental histories explain the latitudinal diversity gradient in brush-footed butterflies". Nature Communications 12: 5717.
Kaleta T, Kern L, Hong S, Hölzer M, Kochs G, Beer J, Schnepf D, Schwemmle M, Bollen N, Kolb P, Huber M, Ulferts S, Weigang S, Dudas G, Wittig A, Jaki L, Padane A, Lagare A, Salou M, Ozer E, Nnaemeka N, Odoom J, Rutayisire R, Benkahla A, Akoua-Koffi C, Ouedraogo AS, Simon-Loriere E, Enouf V, Kröger S, Calvignac-Spencer S, Baele G, Panning M, Fuchs J, 2022. "Antibody escape and global spread of SARS-CoV-2 lineage A.27". Nature Communications 13: 1152.
Tsitsiklis A, Osborne CM, Kamm J, Williamson K, Kalantar K, Dudas G, Caldera S, Lyden A, Tan M, Neff N, Soesanto V, Harris JK, Ambroggio L, Maddux AB, Carpenter TC, Reeder RW, Locandro C, Simões EAF, Leroue MK, Hall MW, Zuppa AF, Carcillo J, Meert KL, Sapru A, Pollack MM, McQuillen PS, Notterman DA, Dean JM, Zinter MS, Wagner BD, DeRisi JL, Mourani PM, Langelier CR, 2022. "Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics". The Lancet Microbe 3(4): e284-e293.
Klitting R, Kafetzopoulou LE, Thiery W, Dudas G, Gryseels S, Kotamarthi A, Vrancken B, Gangavarapu K, Momoh M, Sandi JD, Goba A, Alhasan F, Grant DS, Okogbenin S, Ogbaini-Emovo E, Garry RF, Smither AR, Zeller M, Pauthner MG, McGraw M, Hughes LD, Duraffour S, Günther S, Suchard MA, Lemey P, Andersen KG, Dellicour S, 2022. "Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades". Nature Communications 13: 5596.
Tang M, Dudas G, Bedford T, Minin VN., 2023. "Fitting stochastic epidemic models to gene genealogies using linear noise approximation". Annals of Applied Statistics 17(1): 1-22.
Selhorst P, Lequime S, Dudas G, Proesmans S, Lutumbah P, Katshongo F, Ramadan K, Micalessi I, Ahuka-Mundeke S, Vanlerberghe V, Van Esbroeck M, Arien KK, 2023. "Phylogeographic analysis of dengue virus serotype 1 and Cosmopolitan serotype 2 in Africa". International Journal of Infectious Diseases 133: 46-52.
Medicielo J, Waltari E, Glascock AL, Dudas G, DeFelice B, Gray I, Tato CM, Wong J, Ahyong V, 2023. "Evolutionary genomics identifies host-directed therapeutics to treat intracellular bacterial infections". bioRxiv 2023.08.01.551011.
Glascock AL, Waltari E, Dudas G, Wong J, Ahyong V, 2024. "PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes". BMC Bioinformatics 25, 49.
Holtz A, Van Weyenbergh J, Hong SL, Cuypers L, O'Toole Á, Dudas G, Gerdol M, Potter BI, Ntoumi F, Mapanguy CCM, Vanmechelen B, Wawina-Bokalanga T, Van Holm B, Menezes SM, Soubotko K, Van Pottelbergh G, Wollants E, Vermeersch P, Jacob AS, Maes B, Obbels D, Matheeussen V, Martens G, Gras J, Verhasselt B, Laffut W, Vael C, Goegebuer T, van der Kant R, Rousseau F, Schymkowitz J, Serrano L, Delgado J, Wenseleers T, Bours V, André E, Suchard MA, Rambaut A, Dellicour S, Maes P, Durkin K, Baele G, 2023. "Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature". BMC Infectious Diseases 24(1): 1139.
Brusselmans M, Carvalho LM, Hong SL, Gao J, Matsen IV FA, Rambaut A, Lemey P, Suchard MA, Dudas G, Baele G, 2024. "On the importance of assessing topological convergence in Bayesian phylogenetic inference". Virus Evolution: veae081.
Baele G, Carvalho LM, Brusselmans M, Dudas G, Ji X, McCrone JT, Lemey P, Suchard M, Rambaut A, 2024. "HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X". bioRxiv 2024.12.08.627395.
Rehman Z, Edington K, Jamal Z, Kritz-Wilson A, Dudas G, Sims S, Myers R, Afrough B, Inamdar L, Haider SA, Ikram A, Salman M, Umair M, 2023. "The introduction of the SARS-CoV-2 BA.4 lineage into Pakistan". Archives of Virology 170(2), 26.
Peacock T, Moncla L, Dudas G, VanInsberghe D, Sukhova K, Lloyd-Smith JO, Worobey M, Lowen AC, Nelson MI, 2023. "The global H5N1 influenza panzootic in mammals". Nature 637, 304–313.
Dudas G, Rambaut A, 2014. "Phylogenetic Analysis of Guinea 2014 EBOV Ebolavirus Outbreak". PLOS Currents Outbreaks Edition 1.
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Gire SK, Goba A, Andersen KG, Sealfon RSG, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, Malboeuf CM, Qu J, Gladden AD, Schaffner SF, Yang X, Jiang P, Nekoui M, Colubri A, Moinya Coomber R, Fonnie M, Moigboi A, Gbakie M, Kamara FK, Tucker V, Konuwa E, Saffa S, Sellu J, Abdul Jalloh A, Kovoma A, Koninga J, Mustapha I, Kargbo K, Foday M, Yillah M, Kanneh F, Robert W, James L. B. Massally, Chapman SB, Bochicchio J, Murphy C, Nusbaum C, Young S, Birren BW, Grant DS, Scheiffelin JS, Lander ES, Happi C, Gevao SM, Gnirke A, Rambaut A, Garry RF, Khan SH, Sabeti PC, 2014. "Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak". Science 345(6202): 1369-1372.
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Dudas G, Bedford T, Lycett S, Rambaut A, 2014. "Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1–PB2–HA Gene Complex", Molecular Biology and Evolution 32(1):162-172.
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Park DJ, Dudas G, Wohl S, Goba A, Whitmer, SLM and Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, Nosamiefan D, Yozwiak NL, Moses LM, Jiang, P, Lin AE, Schaffner SF, Bird B, Towner J, Mamoh M, Gbakie M, Kanneh L, Kargbo D, Massally, James LB and Kamara FK, Konuwa E, Sellu J, Jalloh AA, Mustapha I, Foday M, Yillah M, Erickson BR, Sealy T, Blau D, Paddock C, Brault A, Amman B, Basile J, Bearden S, Belser J, Bergeron E, Campbell S, Chakrabarti A, Dodd K, Flint M, Gibbons A, Goodman C, Klena J, McMullan L, Morgan L, Russell B, Salzer J, Sanchez A, Wang D, Jungreis I, Tomkins-Tinch C, Kislyuk A, Lin MF, Chapman S, MacInnis B, Matthews A, Bochicchio J, Hensley LE, Kuhn JH, Nusbaum C, Schieffelin JS, Birren BW, Forget M, Nichol ST, Palacios GF, Ndiaye D, Happi C, Gevao SM, Vandi MA, Kargbo B, Holmes EC, Bedford T, Gnirke A, Ströher, U and Rambaut A, Garry RF, Sabeti PC, 2015. "Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone". Cell 161(7):1516-1526.
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Dudas G, Rambaut A, 2016. "MERS-CoV recombination: implications about the reservoir and potential for adaptation". Virus Evolution 2(1): vev023.
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Rambaut A, Dudas G, de Carvalho LM, Park DJ, Yozwiak NL, Holmes EC, Andersen KG, 2016. "Comment on “Mutation rate and genotype variation of Ebola virus from Mali case sequences”". Science 353(6300): 658.
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Dudas G, de Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D’Ambrozio J, Dellicour S, di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A, 2017. "Virus genomes reveal factors that spread and sustained the Ebola epidemic". Nature 544(7650): 309:315.
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Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Mary Baniecki L, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Edgar W. Kopp IV, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG, 2017. "Genomic epidemiology reveals multiple introductions of Zika virus into the United States". Nature 546(7658): 401:405.
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Dudas G, de Carvalho LM, Rambaut A, Bedford T, 2017. "MERS-CoV spillover at the camel-human interface". eLife 7: e31257.
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Dudas G, Bedford T, 2019. "The ability of single genes vs full genomes to resolve time and space in outbreak analysis". BMC Evolutionary Biology 19: 232.
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Dudas G, Huber G, Wilkinson M, Yllanes D, 2021. "Polymorphism of Genetic Ambigrams". Virus Evolution 7(1): veab038.
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Batson J, Kistler A, Dudas G, Li L, Ratnasari K, Haas-Stapleton E, Logan P, Retallack H, 2021. "Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay". eLife 10:e68353
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Arze CA, Springer S, Dudas G, P Sneha, Bhattacharyya A, Swaminathan H, Brugnara C, Delagrave S, Ong T, Kahvejian A, Echelard Y, Weinstein EG, Hajjar RJ, Andersen KG, Yozwiak NL, 2021. "Global genome analysis reveals a vast and dynamic anellovirus landscape within the human virome". Cell Host & Microbe 29(8):1305-1315.e6.
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Dudas G, Hong SL, Potter B, Calvignac-Spencer S, Niatou-Singa FS, Tombolomako TB, Fuh-Neba T, Vickos U, Ulrich M, Leendertz FH, Khan K, Huber C, Watts A, Olendraitė I, Snijder J, Wijnant KN, Bonvin AMJJ, Martres P, Behillil S, Ayouba A, Maidadi FM, Meta Djomsi D, Godwe C, Butel C, Šimaitis A, Gabrielaitė M, Katėnaitė M, Norvilas R, Raugaitė L, Koyaweda G, Kaleb Kandou J, Jonikas R, Nasvytienė I, Žemeckienė Ž, Gečys D, Tamušauskaitė K, Norkienė M, Vasiliūnaitė E, Žiogienė D, Timinskas A, Šukys M, Šarauskas M, Alzbutas G, Amuri A, Lusamaki E, Makangara J, Muyembe F, Lofiko E, Mbala P, Tamfum J, Darnycka Belizaire M, Essomba R, Assoumou M, Mboringong A, Dieng A, Juozapaitė D, Hosch S, Obama J, Ondo’o Ayekaba M, Naumovas D, Pautienius A, Rafaï C, Vitkauskienė A, Ugenskienė R, Gedvilaitė A, Čereškevičius D, Lesauskaitė V, Žemaitis L, Griškevičius L, Baele G, 2021. "Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions". Nature Communications 12: 5769.
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Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C, Bulgarian SARS-CoV-2 sequencing group, Communicable Diseases Genomics Network (Australia and New Zealand), COVID-19 Impact Project, Danish Covid-19 Genome Consortium, Fiocruz COVID-19 Genomic Surveillance Network, GISAID core curation team, Network for Genomic Surveillance in South Africa (NGS-SA), Swiss SARS-CoV-2 Sequencing Consortium, Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Branda B, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR, 2021. "Global disparities in SARS-CoV-2 genomic surveillance". Nature Communications 13: 7003.
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Dudas G and Batson J, 2023. "Accumulated metagenomic studies reveal recent migration, whole genome evolution, and undiscovered diversity of orthomyxoviruses". Journal of Virology 97(10): e01056-23
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Black A, Dudas G, 2024. "The Applied Genomic Epidemiology Handbook: A Practical Guide to Leveraging Pathogen Genomic Data in Public Health". Chapman and Hall/CRC 1st ed., ISBN-13: 978-1032530260
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Workshop, University of Zurich, 2015
Lecture, University of Arizona, 2018
Lecture, Vilnius University, 2022
Lecture, Vilnius University, 2023
Lecture, Vilnius University, 2024